Computer Science Department Thesis Defense - Borys Komarov

Please join the Computer Science Department for the upcoming thesis defense:

Presenter: Borys Komarov

Thesis title: 3D GPU-based Image Reconstruction Algorithm for the Application in a Clinical Organ-targeted PET Camera

Abstract: Functional medical imaging is unique in its ability to visualize molecular interactions and pathways in the body. Organ-targeted Positron Emission Tomography (PET) is a functional imaging technique that has emerged to meet the demands of precision medicine and has shown advantages in terms of sensitivity and image quality compared to whole-body (WB) PET. A common application for organ-targeted PET is oncology, particular breast cancer imaging. In this work we present the application of Graphics Processing Unit (GPU) to significantly accelerate reconstruction of clinical breast images acquired with an organ-targeted PET camera and reconstructed using the Maximum Likelihood Estimation Maximization (MLEM) algorithm. The PET camera is configured with two planar detector heads with a sensing area of 232mm×174mm. Acquired raw image data are converted into list mode format and reconstructed by a GPU-based 3D MLEM algorithm that was developed specifically for the limited-angle capabilities of the planar PET geometry. The algorithm applies corrections including attenuation and scatter to provide clinical grade image quality. We demonstrate that a transition from originally developed Central Processing Unit (CPU) to newly developed GPU-based algorithm improves single iteration speed by more than 400 times, while preserving image quality. The latter has been assessed on clinical data and through phantom tests performed according to the National Electrical Manufacturers Association (NEMA) NU-4 standards. The gain in reconstruction speed is expected to result in improved patient throughput capabilities of the clinical organ-targeted PET. Indeed, GPU-based image reconstruction reduces time needed for a typical breast image reconstruction to less than 5 minutes thus making it shorter than the image acquisition time. This is of particular importance in improving patient throughput and clinical adaptation of the PET system.


Committee Members:
Dr. Zubair Fadlullah (supervisor, committee chair), Dr. Alla Reznik (co-supervisor, Physics), Dr. Garima Bajwa, Dr. Mostafa Fouda (Idaho State University)

Please contact grad.compsci@lakeheadu.ca for the Zoom link.
Everyone is welcome.